Publications

  • [DOI] A. Akay, D. Jordan, I. C. Navarro, T. Wrzesinski, C. P. Ponting, E. A. Miska, and W. Haerty, “Identification of functional long non-coding RNAs in c. elegans,” Bmc biology, vol. 17, iss. 1, p. 14, 2019.
    [Bibtex]
    @ARTICLE{Akay2019-ce,
    title = "Identification of functional long non-coding {RNAs} in C. elegans",
    author = "Akay, Alper and Jordan, David and Navarro, Isabela Cunha and
    Wrzesinski, Tomasz and Ponting, Chris P and Miska, Eric A and
    Haerty, Wilfried",
    journal = "BMC biology",
    volume = 17,
    number = 1,
    pages = "14",
    month = feb,
    year = 2019,
    url = "http://dx.doi.org/10.1186/s12915-019-0635-7",
    language = "en",
    issn = "1741-7007",
    pmid = "30777050",
    doi = "10.1186/s12915-019-0635-7",
    pmc = "PMC6378714"
    }
  • K. M. Suen, F. Braukmann, R. Butler, D. Bensaddek, A. Akay, C. Lin C, N. Doshi, A. Sapetschnig, A. Lamond, and E. A. Miska, “Direct interaction of PIWI and DEPS-1 is essential for piRNA function and condensate ultrastructure in caenorhabditis elegans,” Biorxiv, 2019.
    [Bibtex]
    @ARTICLE{Suen2019-am,
    title = "Direct interaction of {PIWI} and {DEPS-1} is essential for
    {piRNA} function and condensate ultrastructure in Caenorhabditis
    elegans",
    author = "Suen, K M and Braukmann, F and Butler, R and Bensaddek, D and
    Akay, A and Lin C, C and Doshi, N and Sapetschnig, A and Lamond,
    A and Miska, E A",
    journal = "bioRxiv",
    publisher = "biorxiv.org",
    year = 2019,
    url = "https://www.biorxiv.org/content/10.1101/580043v1.abstract"
    }
  • [DOI] S. Sarabipour, E. M. Wissink, S. J. Burgess, Z. Hensel, H. Debat, E. Emmott, A. Akay, K. Akdemir, and B. Schwessinger, “Maintaining confidence in the reporting of scientific outputs,” PeerJ Preprints, e27098v1, 2018.
    [Bibtex]
    @TECHREPORT{Sarabipour2018-cz,
    title = "Maintaining confidence in the reporting of scientific outputs",
    author = "Sarabipour, Sarvenaz and Wissink, Erin M and Burgess, Steven J
    and Hensel, Zach and Debat, Humberto and Emmott, Edward and
    Akay, Alper and Akdemir, Kadir and Schwessinger, Benjamin",
    publisher = "PeerJ Inc.",
    number = "e27098v1",
    institution = "PeerJ Preprints",
    month = aug,
    year = 2018,
    url = "https://peerj.com/preprints/27098/",
    language = "en",
    issn = "2167-9843",
    doi = "10.7287/peerj.preprints.27098v1"
    }
  • [DOI] S. {Sarabipour, E. M. Wissink, S. J. Burgess, Z. Hensel, H. Debat, E. Emmott, A. Akay, K. Akdemir, and B. Schwessinger, “Preprints are good for science and good for the public,” Nature, vol. 560, iss. 7720, p. 553, 2018.
    [Bibtex]
    @ARTICLE{S_Sarabipour_EM_Wissink_SJ_Burgess_Z_Hensel_H_Debat_E_Emmott_A_Akay_KC_Akdemir_B_Schwessinger2018-fl,
    title = "Preprints are good for science and good for the public",
    author = "{Sarabipour, Sarvenaz and Wissink, Erin M and Burgess, Steven J
    and Hensel, Zach and Debat, Humberto and Emmott, Edward and
    Akay, Alper and Akdemir, Kadir and Schwessinger, Benjamin}",
    journal = "Nature",
    volume = 560,
    number = 7720,
    pages = "553",
    month = aug,
    year = 2018,
    url = "http://dx.doi.org/10.1038/d41586-018-06054-4",
    language = "en",
    issn = "0028-0836, 1476-4687",
    pmid = "30158619",
    doi = "10.1038/d41586-018-06054-4"
    }
  • [DOI] A. Akay, T. Di Domenico, K. M. Suen, A. Nabih, G. E. Parada, M. Larance, R. Medhi, A. C. Berkyurek, X. Zhang, C. J. Wedeles, K. L. M. Rudolph, J. Engelhardt, M. Hemberg, P. Ma, A. I. Lamond, J. M. Claycomb, and E. A. Miska, “The helicase Aquarius/EMB-4 is required to overcome intronic barriers to allow nuclear RNAi pathways to heritably silence transcription,” Developmental cell, vol. 42, iss. 3, p. 241–255.e6, 2017.
    [Bibtex]
    @ARTICLE{Akay2017-jt,
    title = "The Helicase {Aquarius/EMB-4} Is Required to Overcome Intronic
    Barriers to Allow Nuclear {RNAi} Pathways to Heritably Silence
    Transcription",
    author = "Akay, Alper and Di Domenico, Tomas and Suen, Kin M and Nabih,
    Amena and Parada, Guillermo E and Larance, Mark and Medhi, Ragini
    and Berkyurek, Ahmet C and Zhang, Xinlian and Wedeles,
    Christopher J and Rudolph, Konrad L M and Engelhardt, Jan and
    Hemberg, Martin and Ma, Ping and Lamond, Angus I and Claycomb,
    Julie M and Miska, Eric A",
    journal = "Developmental cell",
    volume = 42,
    number = 3,
    pages = "241--255.e6",
    month = aug,
    year = 2017,
    url = "http://dx.doi.org/10.1016/j.devcel.2017.07.002",
    language = "en",
    issn = "1534-5807, 1878-1551",
    pmid = "28787591",
    doi = "10.1016/j.devcel.2017.07.002",
    pmc = "PMC5554785"
    }
  • [DOI] P. van Delft, A. Akay, S. M. Huber, C. Bueschl, K. L. M. Rudolph, T. Di Domenico, R. Schuhmacher, E. A. Miska, and S. Balasubramanian, “The profile and dynamics of RNA modifications in animals,” Chembiochem: a european journal of chemical biology, vol. 18, iss. 11, p. 979–984, 2017.
    [Bibtex]
    @ARTICLE{Van_Delft2017-yp,
    title = "The Profile and Dynamics of {RNA} Modifications in Animals",
    author = "van Delft, Pieter and Akay, Alper and Huber, Sabrina M and
    Bueschl, Christoph and Rudolph, Konrad L M and Di Domenico,
    Tom{\'a}s and Schuhmacher, Rainer and Miska, Eric A and
    Balasubramanian, Shankar",
    journal = "Chembiochem: a European journal of chemical biology",
    volume = 18,
    number = 11,
    pages = "979--984",
    month = jun,
    year = 2017,
    url = "http://dx.doi.org/10.1002/cbic.201700093",
    language = "en",
    issn = "1439-4227, 1439-7633",
    pmid = "28449301",
    doi = "10.1002/cbic.201700093",
    pmc = "PMC5784800"
    }
  • [DOI] A. Akay, P. Sarkies, and E. A. Miska, “E. coli OxyS non-coding RNA does not trigger RNAi in c. elegans,” Scientific reports, vol. 5, p. 9597, 2015.
    [Bibtex]
    @ARTICLE{Akay2015-ut,
    title = "E. coli {OxyS} non-coding {RNA} does not trigger {RNAi} in C.
    elegans",
    author = "Akay, Alper and Sarkies, Peter and Miska, Eric A",
    journal = "Scientific reports",
    volume = 5,
    pages = "9597",
    month = apr,
    year = 2015,
    url = "http://dx.doi.org/10.1038/srep09597",
    language = "en",
    issn = "2045-2322",
    pmid = "25873159",
    doi = "10.1038/srep09597",
    pmc = "PMC4397834"
    }
  • [DOI] A. Akay, A. Craig, N. Lehrbach, M. Larance, E. Pourkarimi, J. E. Wright, A. Lamond, E. Miska, and A. Gartner, “RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in caenorhabditis elegans,” Open biology, vol. 3, iss. 11, p. 130151, 2013.
    [Bibtex]
    @ARTICLE{Akay2013-so,
    title = "{RNA-binding} protein {GLD-1/quaking} genetically interacts with
    the mir-35 and the let-7 {miRNA} pathways in Caenorhabditis
    elegans",
    author = "Akay, Alper and Craig, Ashley and Lehrbach, Nicolas and Larance,
    Mark and Pourkarimi, Ehsan and Wright, Jane E and Lamond, Angus
    and Miska, Eric and Gartner, Anton",
    journal = "Open biology",
    volume = 3,
    number = 11,
    pages = "130151",
    month = nov,
    year = 2013,
    url = "http://dx.doi.org/10.1098/rsob.130151",
    language = "en",
    issn = "2046-2441",
    pmid = "24258276",
    doi = "10.1098/rsob.130151",
    pmc = "PMC3843822"
    }
  • A. Gartner and A. Akay, “Stress response: anything that doesn’t kill you makes you stronger,” Current biology: cb, 2013.
    [Bibtex]
    @ARTICLE{Gartner2013-jc,
    title = "Stress response: anything that doesn't kill you makes you
    stronger",
    author = "Gartner, A and Akay, A",
    journal = "Current biology: CB",
    publisher = "Elsevier",
    year = 2013,
    url = "https://www.sciencedirect.com/science/article/pii/S0960982213011834",
    issn = "0960-9822"
    }
  • [DOI] H. Feitsma, A. Akay, and E. Cuppen, “Alkylation damage causes MMR-dependent chromosomal instability in vertebrate embryos,” Nucleic acids research, vol. 36, iss. 12, p. 4047–4056, 2008.
    [Bibtex]
    @ARTICLE{Feitsma2008-yf,
    title = "Alkylation damage causes {MMR-dependent} chromosomal instability
    in vertebrate embryos",
    author = "Feitsma, Harma and Akay, Alper and Cuppen, Edwin",
    journal = "Nucleic acids research",
    volume = 36,
    number = 12,
    pages = "4047--4056",
    month = jul,
    year = 2008,
    url = "http://dx.doi.org/10.1093/nar/gkn341",
    language = "en",
    issn = "0305-1048, 1362-4962",
    pmid = "18522974",
    doi = "10.1093/nar/gkn341",
    pmc = "PMC2475609"
    }