Publications

2025

Sultanova, Zahida; Shen, Aykut; Hencel, Katarzyna; Carlsson, Hanne; Crighton, Zoe; Clifton, Daniel; Akay, Alper; Maklakov, Alexei A.

Optimising Age-Specific Insulin Signalling to Slow Down Reproductive Ageing Increases Fitness in Different Nutritional Environments Journal Article

In: Aging Cell, vol. n/a, no. n/a, pp. e14481, 2025, ISSN: 1474-9726, (_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/acel.14481).

Abstract | Links | BibTeX | Tags: ageing, developmental theory of ageing, life-history evolution, trade-offs

2024

Shen, Aykut; Hencel, Katarzyna; Parker, Matthew T; Scott, Robyn; Skukan, Roberta; Adesina, Aduragbemi S; Metheringham, Carey L; Miska, Eric A; Nam, Yunsun; Haerty, Wilfried; Simpson, Gordon G; Akay, Alper

U6 snRNA m6A modification is required for accurate and efficient splicing of C. elegans and human pre-mRNAs Journal Article

In: Nucleic Acids Research, pp. gkae447, 2024, ISSN: 0305-1048.

Abstract | Links | BibTeX | Tags:

2023

Sultanova, Zahida; Shen, Aykut; Hencel, Katarzyna; Carlsson, Hanne; Crighton, Zoe; Clifton, Daniel; Akay, Alper; Maklakov, Alexei A

Early-adulthood intermittent fasting and reduced insulin/IGF-1 signalling additively increase lifespan and slow down reproductive ageing Unpublished

2023, (Publication Title: bioRxiv).

Abstract | Links | BibTeX | Tags:

2021

Navarro, Isabela Cunha; Tuorto, Francesca; Jordan, David; Legrand, Carine; Price, Jonathan; Braukmann, Fabian; Hendrick, Alan G; Akay, Alper; Kotter, Annika; Helm, Mark; Lyko, Frank; Miska, Eric A

Translational adaptation to heat stress is mediated by RNA 5-methylcytosine in Caenorhabditis elegans Journal Article

In: EMBO J., vol. 40, no. 6, pp. e105496, 2021, ISSN: 0261-4189, (Publisher: John Wiley & Sons, Ltd).

Abstract | Links | BibTeX | Tags: 5-methylcytosine, Caenorhabditis elegans, NSUN, RNA modifications, translation efficiency

Berkyurek, Ahmet C; Furlan, Giulia; Lampersberger, Lisa; Beltran, Toni; Weick, Eva-Maria; Nischwitz, Emily; Navarro, Isabela Cunha; Braukmann, Fabian; Akay, Alper; Price, Jonathan; Butter, Falk; Sarkies, Peter; Miska, Eric A

The RNA polymerase II subunit RPB-9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription Journal Article

In: EMBO J., vol. 40, no. 5, pp. e105565, 2021, ISSN: 0261-4189, (Publisher: EMBO).

Abstract | Links | BibTeX | Tags: integrator, piRNAs, RNA polymerase II, rpb-9, transcription termination

Kranse, Olaf; Beasley, Helen; Adams, Sally; Pires-daSilva, Andre; Bell, Christopher; Lilley, Catherine J; Urwin, Peter E; Bird, David; Miska, Eric; Smant, Geert; Gheysen, Godelieve; Jones, John; Viney, Mark; Abad, Pierre; Maier, Thomas R; Baum, Thomas J; Siddique, Shahid; Williamson, Valerie; Akay, Alper; den Akker, Sebastian Eves-van

Toward genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles Journal Article

In: G3, vol. 11, no. 2, 2021, ISSN: 2160-1836.

Abstract | Links | BibTeX | Tags: genetic modification, germline, lipofection, plant-parasitic nematodes, transformation, transient expression

2020

Suen, Kin Man; Braukmann, Fabian; Butler, Richard; Bensaddek, Dalila; Akay, Alper; Lin, Chi-Chuan; Milonaitytė, Dovilė; Doshi, Neel; Sapetschnig, Alexandra; Lamond, Angus; Ladbury, John Edward; Miska, Eric Alexander

DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans Journal Article

In: Nat. Commun., vol. 11, no. 1, pp. 4242, 2020, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags:

2019

Akay, Alper; Jordan, David; Navarro, Isabela Cunha; Wrzesinski, Tomasz; Ponting, Chris P; Miska, Eric A; Haerty, Wilfried

Identification of functional long non-coding RNAs in C. elegans Journal Article

In: BMC Biol., vol. 17, no. 1, pp. 14, 2019, ISSN: 1741-7007.

Abstract | Links | BibTeX | Tags: Akay_Lab/lncRNA, C. elegans, CRISPR, lincRNA, lncRNA, Long non-coding RNA, Non-coding

2018

Sarabipour, Sarvenaz; Wissink, Erin M.; Burgess, Steven J.; Hensel, Zach; Debat, Humberto; Emmott, Edward; Akay, Alper; Akdemir, Kadir; Schwessinger, Benjamin

Maintaining confidence in the reporting of scientific outputs Technical Report

PeerJ Preprints no. e27098v1, 2018, (ISSN: 2167-9843).

Abstract | Links | BibTeX | Tags: academic publishing, Open science, Peer review, Preprints, science communication, science journalism

Sarabipour, Sarvenaz

Preprints are good for science and good for the public Journal Article

In: Nature, vol. 560, no. 7720, pp. 553, 2018, ISSN: 0028-0836, (Publisher: Nature Publishing Group).

Abstract | Links | BibTeX | Tags: Communication, Media, Publishing

2017

Akay, Alper; Domenico, Tomas Di; Suen, Kin M; Nabih, Amena; Parada, Guillermo E; Larance, Mark; Medhi, Ragini; Berkyurek, Ahmet C; Zhang, Xinlian; Wedeles, Christopher J; Rudolph, Konrad L M; Engelhardt, Jan; Hemberg, Martin; Ma, Ping; Lamond, Angus I; Claycomb, Julie M; Miska, Eric A

The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription Journal Article

In: Dev. Cell, vol. 42, no. 3, pp. 241–255.e6, 2017, ISSN: 1534-5807.

Abstract | Links | BibTeX | Tags: C. elegans, epigenetic inheritance, nuclear RNAi, piRNA, Piwi, RNA processing, RNAi, splicing, transcription, transposable elements

Delft, Pieter; Akay, Alper; Huber, Sabrina M; Bueschl, Christoph; Rudolph, Konrad L M; Domenico, Tomás Di; Schuhmacher, Rainer; Miska, Eric A; Balasubramanian, Shankar

The Profile and Dynamics of RNA Modifications in Animals Journal Article

In: Chembiochem, vol. 18, no. 11, pp. 979–984, 2017, ISSN: 1439-4227.

Abstract | Links | BibTeX | Tags: Caenorhabditis elegans, isotopic labeling, mass spectrometry, RNA modifications, stress response, tRNA

2015

Akay, Alper; Sarkies, Peter; Miska, Eric A

E. coli OxyS non-coding RNA does not trigger RNAi in C. elegans Journal Article

In: Sci. Rep., vol. 5, pp. 9597, 2015, ISSN: 2045-2322.

Abstract | Links | BibTeX | Tags:

2013

Akay, Alper; Craig, Ashley; Lehrbach, Nicolas; Larance, Mark; Pourkarimi, Ehsan; Wright, Jane E; Lamond, Angus; Miska, Eric; Gartner, Anton

RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans Journal Article

In: Open Biol., vol. 3, no. 11, pp. 130151, 2013, ISSN: 2046-2441.

Abstract | Links | BibTeX | Tags: Caenorhabditis elegans, gld-1, let-7, miRNA, SILAC

Gartner, A; Akay, A

Stress response: anything that doesn't kill you makes you stronger Journal Article

In: Curr. Biol., 2013, ISSN: 0960-9822, (Publisher: Elsevier).

Abstract | Links | BibTeX | Tags:

2008

Feitsma, Harma; Akay, Alper; Cuppen, Edwin

Alkylation damage causes MMR-dependent chromosomal instability in vertebrate embryos Journal Article

In: Nucleic Acids Res., vol. 36, no. 12, pp. 4047–4056, 2008, ISSN: 0305-1048.

Abstract | Links | BibTeX | Tags: